How to cite?

The PaCER algorithm is described in:

A. Husch, M. V. Petersen, P. Gemmar, J. Goncalves, F. Hertel: PaCER – A fully automated method for electrode trajectory and contact reconstruction in deep brain stimulation, NeuroImage: Clinical, Volume 17, 2018, Pages 80-89, Available online 6 October 2017, ISSN 2213-1582, https://doi.org/10.1016/j.nicl.2017.10.004., [Open access fulltext].

For people interested in even more technical details, the preprocessing pipeline is described in more details here:

A. Husch, P. Gemmar, J. Lohscheller, F. Bernard, F. Hertel: Assessment of Electrode Displacement and Deformation with Respect to Pre-Operative Planning in Deep Brain Stimulation. Bildverarbeitung für die Medizin 2015, Springer Berlin Heidelberg, 2015.[ORBilu repository with fulltext request form]

An example of using PaCER within an automatic image-registration pipeline for DBS assessment is described in:

A. Husch, M. V. Petersen, P. Gemmar, J. Goncalves, N. Sunde, F. Hertel: Post-operative deep brain stimulation assessment: Automatic data integration and report generation, Brain Stimulation, Available online 1 February 2018. [Open access fulltext]

ARTENOLIS (Automated Reproducibility and Testing Environment for Licensed Software) is a general-purpose and flexible infrastructure software application that implements continuous integration for open-source software with licensed dependencies. You may cite ARTENOLIS as:

L. Heirendt, S. Arreckx, C. Trefois, Y. Jarosz, M. Vyas, V. P. Satagopam, R. Schneider, I. Thiele, R. M. T. Fleming: ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software, abs/1712.05236, 2017.

Please acknowledge the respective papers when using the algorithm in your work.